Terminus
Note
This class is imported from VRS. Its full documentation can be found in the latest VRS specification at vrs.ga4gh.org.
Draft
May change significantly in future releases. See Maturity Model.
Computational Definition
The Terminus data class provides a structure for describing the end (terminus) of a molecule. Structurally similar to Adjacency, but used for describing where a molecule terminates (instead of adjoining another molecule).
GA4GH Digest
Prefix |
Inherent |
|---|---|
TM |
[‘location’, ‘type’] |
Information Model
Some Terminus attributes are inherited from Variation.
Field |
Flags |
Type |
Limits |
Description |
|---|---|---|---|---|
id |
string |
0..1 |
The ‘logical’ identifier of the Entity in the system of record, e.g. a UUID. This ‘id’ is unique within a given system, but may or may not be globally unique outside the system. It is used within a system to reference an object from another. |
|
type |
string |
1..1 |
MUST be “Terminus”. |
|
name |
string |
0..1 |
A primary name for the entity. |
|
description |
string |
0..1 |
A free-text description of the Entity. |
|
aliases |
⋮ | string |
0..m |
Alternative name(s) for the Entity. |
extensions |
⋮ | 0..m |
A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model. |
|
digest |
string |
0..1 |
A sha512t24u digest created using the VRS Computed Identifier algorithm. |
|
expressions |
⋮ | 0..m |
||
location |
1..1 |
The location of the terminus. |
Inherits: MolecularVariation
Used in: Adjacency Constraint, DerivativeMolecule