Additional Data Types

Below are the additional data types used by the Cat-VRS models.

FunctionalDomain

The FunctionalDomain class is used to populate the functionalDomains property within the Adjacency Constraint. It is intended to represent Functional Domains from the VICC Gene Fusion Specification.

Draft

May change significantly in future releases. See Maturity Model.

Computational Definition

A sequence location whose presence or absence is used to define an adjacency.

Information Model

Some FunctionalDomain attributes are inherited from Entity.

Field	Flags	Type	Limits	Description
id		string	0..1	The ‘logical’ identifier of the Entity in the system of record, e.g. a UUID. This ‘id’ is unique within a given system, but may or may not be globally unique outside the system. It is used within a system to reference an object from another.
type		string	1..1	Must be “FunctionalDomain”
name		string	0..1	A primary name for the entity.
description		string	0..1	A free-text description of the Entity.
aliases	⋮	string	0..m	Alternative name(s) for the Entity.
extensions	⋮	Extension	0..m	A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.
location		Location	1..1	A Sequence Location for the domain.
status		string	1..1	MUST be either “preserved” or “lost”

Inherits: Entity

Used in: Adjacency Constraint

UnspecifiedElement

The UnspecifiedElement class is an available item to populate the adjoinedElements property within the Adjacency Constraint. It is intended to represent both the Multiple Possible Gene Component and Unknown Gene Component from the VICC Gene Fusion Specification.

Draft

May change significantly in future releases. See Maturity Model.

Computational Definition

Represents an unspecified element that satisfies the described adjacency.

Information Model

Some UnspecifiedElement attributes are inherited from Entity.

Field	Flags	Type	Limits	Description
id		string	0..1	The ‘logical’ identifier of the Entity in the system of record, e.g. a UUID. This ‘id’ is unique within a given system, but may or may not be globally unique outside the system. It is used within a system to reference an object from another.
type		string	1..1	Must be “UnspecifiedElement”
name		string	0..1	A primary name for the entity.
description		string	0..1	A free-text description of the Entity.
aliases	⋮	string	0..m	Alternative name(s) for the Entity.
extensions	⋮	Extension	0..m	A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.

Inherits: Entity

Used in: Adjacency Constraint, Gene Fusion